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    <div class="moz-cite-prefix">Hi, Dieter, I had some trouble too
      because the installation script is specific to installation in the
      user's home directory, as shown in the instructions. Since I was
      installing elsewhere, I had to modify install_cryoFIT.py to
      specify my install location. The two lines I edited are below
      (N.B. change your_installation_directory). After that change the
      installation succeeded. <br>
      <br>
      home_dir = expanduser("your_installation_directory")<br>
      <br>
      src_dir = home_dir + "/src"<br>
      <br>
      Michael<br>
       <br>
      On 02/13/2018 01:39 AM, Dieter Blaas wrote:<br>
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    <blockquote
      cite="mid:56b1c0a2-2f8b-0085-2c60-dba69af30836@meduniwien.ac.at"
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      <p>Dear colleagues,</p>
      <p>    has anybody already installed and tested CryoFit and could
        give me a hint as to how to install it? I tried to do so by
        following the description on the Github site but so far failed.
        Thanks, Dieter<br>
      </p>
      <pre class="moz-signature" cols="72">------------------------------------------------------------------------
Dieter Blaas,
Max F. Perutz Laboratories
Medical University of Vienna, 
Inst. Med. Biochem., Vienna Biocenter (VBC), 
Dr. Bohr Gasse 9/3, 
A-1030 Vienna, Austria, 
Tel: 0043 1 4277 61630, 
Fax: 0043 1 4277 9616, 
e-mail: <a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="mailto:dieter.blaas@meduniwien.ac.at">dieter.blaas@meduniwien.ac.at</a>
------------------------------------------------------------------------</pre>
      <div class="moz-cite-prefix">Am 07.02.2018 um 10:10 schrieb
        Sanbonmatsu, Karissa Yoshiko:<br>
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      <blockquote type="cite"
        cite="mid:91886037451647b790b8b995e7235c64@lanl.gov">
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          <p>Dear colleagues,</p>
          <p><br>
          </p>
          <p>We are excited to announce the release of CryoFIT, a
            program for fitting <span style="font-size: 12pt;">atomistic
              models to cryo-EM maps. The current version is designed
              for </span><span style="font-size: 12pt;">fitting lower
              resolution maps but this does not preclude use with
              higher </span><span style="font-size: 12pt;">resolution
              maps. The CryoFIT module is built on Gromacs and
              accessible </span><span style="font-size: 12pt;">through
              Phenix (<a moz-do-not-send="true"
                class="moz-txt-link-freetext"
                href="https://www.phenix-online.org/documentation/reference/">https://www.phenix-online.org/documentation/reference/</a></span><span
              style="font-size: 12pt;">cryo_fit.html), currently
              via GitHub. It supports both the Phenix GUI and </span><span
              style="font-size: 12pt;">the command line.  CryoFIT is
              based on the algorithm in Kirmiziatltin, et </span><span
              style="font-size: 12pt;">al., Methods of Enzymology 2015 (<a
                href="https://doi.org/10.1016/bs.mie.2015.02.011"
                class="OWAAutoLink" id="LPlnk122829"
                previewremoved="true" moz-do-not-send="true">https://doi.org/10.1016/bs.mie.2015.02.011</a>). </span><span
              style="font-size: 12pt;">This is an alpha version. Please
              send any feature requests and bug reports </span><span
              style="font-size: 12pt;">to Doo Nam Kim (doonam at
              lanl.gov).</span></p>
          <p><span style="font-size: 12pt;"><br>
            </span></p>
          <p>Happy Modeling!</p>
          <p><br>
          </p>
          <p>Karissa</p>
          <p><br>
          </p>
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                    <p class="p1">***********************************</p>
                    <p class="p1">Karissa Y. Sanbonmatsu</p>
                    <p class="p1">Principal Investigator</p>
                    <p class="p1">Theoretical Biology and Biophysics</p>
                    <p class="p1">Theoretical Division</p>
                    <p class="p1">Los Alamos National Laboratory</p>
                    <p class="p1"><a moz-do-not-send="true"
                        class="moz-txt-link-freetext"
                        href="http://www.lanl.gov/projects/karissa">http://www.lanl.gov/projects/karissa</a></p>
                    <p class="p1"><a href="http://www.t6.lanl.gov/kys"
                        target="_blank" id="LPNoLP"
                        moz-do-not-send="true">http://www.t10.lanl.gov/kys</a></p>
                    <p class="p1">***********************************</p>
                  </div>
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