<div dir="ltr">Dear all,<div><br></div><div>Please ignore my previous email. I made a mistake in command line with " --i " in between, which should not be there when using --continue option.</div><div><br></div><div>Sorry!</div><div><br></div><div>Best,</div><div><br></div><div>Zongli</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Sat, Dec 9, 2017 at 1:26 PM, Zongli Li <span dir="ltr"><<a href="mailto:zongli.li@gmail.com" target="_blank">zongli.li@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Dear lists,<div><br></div><div>I am trying to continue a relion 3D auto-refine job but have the following errors:</div><div><br></div><div><p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">ERROR:</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">MlOptimiser::readStar: File --i cannot be read.</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">File: /programs/x86_64-linux/relion/<wbr>2.1b1_cu9.0/src/ml_optimiser.<wbr>cpp line: ERROR:</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">MlOptimiser::readStar: File --i cannot be read.</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">File: /programs/x86_64-linux/relion/<wbr>2.1b1_cu9.0/src/ml_optimiser.<wbr>cpp line: 676</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">ERROR:</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">MlOptimiser::readStar: File --i cannot be read.</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">File: /programs/x86_64-linux/relion/<wbr>2.1b1_cu9.0/src/ml_optimiser.<wbr>cpp line: 676</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">ERROR:</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">MlOptimiser::readStar: File --i cannot be read.676</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">ERROR:</span></p>
<p style="margin:0px;font-size:13px;line-height:normal;font-family:Menlo"><span style="font-variant-ligatures:no-common-ligatures">MlOptimiser::readStar: File --i cannot be read.</span></p></div><div><span style="font-variant-ligatures:no-common-ligatures"><br></span></div><div><span style="font-variant-ligatures:no-common-ligatures"><br></span></div><div>The relion version is 2.1b1_cu9.0. I used "--continue. --I Refine3D/job001/run_it017_<wbr>optimiser.star ".</div><div><br></div><div>The --continue is not listed in the option list, not sure if it still valid.  </div><div><br></div><div>I also tried to continue the job through GUI but the input button for continue job is grayed out.</div><div><br></div><div>Any suggestions would be highly appreciated!</div><div><br></div><div>Best,</div><div><br></div><div>Zongli</div></div>
</blockquote></div><br></div>