<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
oh, and make sure disk/network IO are not the problem.
<div class=""><br class="">
</div>
<div class="">Are the stacks saved to SSDs on the machine?</div>
<div class=""><br class="">
<div>
<blockquote type="cite" class="">
<div class="">On Aug 4, 2017, at 10:17 AM, Craig Yoshioka <<a href="mailto:yoshiokc@ohsu.edu" class="">yoshiokc@ohsu.edu</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
batch mode and run multiple stacks at the same time rather than multiple GPUs per stack.
<div class=""><br class="">
<div class="">
<blockquote type="cite" class="">
<div class="">On Aug 4, 2017, at 10:15 AM, Zongli Li <<a href="mailto:zongli.li@gmail.com" class="">zongli.li@gmail.com</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div dir="ltr" class="">
<div style="margin-top: 0px; margin-bottom: 0px; font-family: Calibri, Helvetica, sans-serif, serif, EmojiFont; font-size: 16px;" class="">
Dear colleagues,</div>
<div style="margin-top: 0px; margin-bottom: 0px; font-family: Calibri, Helvetica, sans-serif, serif, EmojiFont; font-size: 16px;" class="">
<br class="">
</div>
<div style="margin-top: 0px; margin-bottom: 0px; font-family: Calibri, Helvetica, sans-serif, serif, EmojiFont; font-size: 16px;" class="">
I am running the MotionCor2 on the images stacks that have 50 sub-frames recorded on Gatan K2 camera at super-resolution counting mode. Here is the parameters specified in command line:</div>
<div style="margin-top: 0px; margin-bottom: 0px; font-family: Calibri, Helvetica, sans-serif, serif, EmojiFont; font-size: 16px;" class="">
<br class="">
</div>
<div style="margin: 0px; font-size: 16px; line-height: normal; font-family: Menlo;" class="">
<span style="font-family:Menlo,serif,EmojiFont" class="">-Patch 5 5 -Iter 10 -Tol 0.5 -bft 150 -Kv 300 -Throw 0 -Trunc 0 -PixSize 0.62 -FtBin 2 -Fmdose 1.05 -Gpu 0 1 2 3 -OutStack 1</span></div>
<div style="margin: 0px; font-size: 16px; line-height: normal; font-family: Menlo;" class="">
<span style="font-family:Menlo,serif,EmojiFont" class=""><br class="">
</span></div>
<div style="margin: 0px; font-size: 16px; line-height: normal; font-family: Menlo;" class="">
<span style="font-family:Menlo,serif,EmojiFont" class="">The workstation for running the job has 4 Nvidia GeForce GTX 1080 cards and each movie stack needs ~6 minutes runtime. Comparing to running the same job on two GPU cards (GeForce GTX 680) workstation,
I do not get any gain in terms of speed.</span></div>
<div style="margin: 0px; font-size: 16px; line-height: normal; font-family: Menlo;" class="">
<span style="font-family:Menlo,serif,EmojiFont" class=""><br class="">
</span></div>
<div style="margin: 0px; font-size: 16px; line-height: normal; font-family: Menlo;" class="">
<span style="font-family:Menlo,serif,EmojiFont" class="">Any suggestions?</span></div>
<div style="margin: 0px; font-size: 16px; line-height: normal; font-family: Menlo;" class="">
<span style="font-family:Menlo,serif,EmojiFont" class=""><br class="">
</span></div>
<div style="margin: 0px; font-size: 16px; line-height: normal; font-family: Menlo;" class="">
<span style="font-family:Menlo,serif,EmojiFont" class="">Thank you,</span></div>
<div style="margin: 0px; font-size: 16px; line-height: normal; font-family: Menlo;" class="">
<span style="font-family:Menlo,serif,EmojiFont" class=""><br class="">
</span></div>
<div style="margin: 0px; font-size: 16px; line-height: normal; font-family: Menlo;" class="">
<span style="font-family:Menlo,serif,EmojiFont" class="">Zongli </span></div>
</div>
_______________________________________________<br class="">
3dem mailing list<br class="">
<a href="mailto:3dem@ncmir.ucsd.edu" class="">3dem@ncmir.ucsd.edu</a><br class="">
<a href="https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem" class="">https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem</a><br class="">
</div>
</blockquote>
</div>
<br class="">
</div>
</div>
_______________________________________________<br class="">
3dem mailing list<br class="">
<a href="mailto:3dem@ncmir.ucsd.edu" class="">3dem@ncmir.ucsd.edu</a><br class="">
https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem<br class="">
</div>
</blockquote>
</div>
<br class="">
</div>
</body>
</html>