<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">As posted at: <a href="https://www.wwpdb.org/news/news?year=2017#59089826d3b1d333029d4ea1" class="">https://www.wwpdb.org/news/news?year=2017#59089826d3b1d333029d4ea1</a><div class="">And: <a href="http://emdatabank.org/vrsn_five_archive_update.html" class="">http://emdatabank.org/vrsn_five_archive_update.html</a> <br class=""><div class="">
</div>
<p class="wwpdb-page-news-date">05/02/2017</p>
<h2 class="">Enriched PDB Structure Entry Files Conforming to OneDep Data Standards Are Now Available for Testing</h2><p class="">On
July 12, 2017, the wwPDB partners plan to update the PDB FTP archive
with PDB structure entry files conforming to V5.0 of the <a href="http://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Index/" class="">PDBx/mmCIF dictionary</a>, which already supports the global wwPDB system for Deposition, Biocuration, and Validation of PDB data - <a href="https://www.wwpdb.org/deposition/system-information" class="">OneDep</a>.</p><p class="">In
preparation for this update, to allow the community ample time to test
the planned update and to provide feedback, the wwPDB is now delivering
PDBx/mmCIF and XML structure entry files for all entries in the PDB
archive conforming to the new data standards via a new FTP repository (<a href="ftp://ftp-beta.wwpdb.org/" class="">ftp://ftp-beta.wwpdb.org/</a>). This collection of test files will be updated in concert with regular weekly updates of the PDB archive.</p><p class="">Complete lists of changes can be found at the wwPDB website (<a href="https://www.wwpdb.org/documentation/remediation" class="">https://www.wwpdb.org/documentation/remediation</a>).</p><p class="">The wwPDB strongly encourages the community to review and test the updated files.</p><p class="">Users should report V5.0 data issues to <a href="mailto:deposit-help@mail.wwpdb.org" class="">deposit-help@mail.wwpdb.org</a></p><p class="">We
will attempt to address the reported issues incrementally as User
feedback is received in advance of the rollout on July 12, 2017.</p><p class="">Other
derived data and experimental data files of ftp-beta tree will be
delivered incrementally to the ftp-beta tree between May 3 and July 12,
2017.</p><p class="">The test FTP area (<a href="ftp://ftp.wwpdb.org/pub/pdb/test_data/EM/" class="">ftp://ftp.wwpdb.org/pub/pdb/test_data/EM/</a>)
containing previously updated 3DEM model files (previously made
available in December 2016) is to be retired effective May 3 2017.</p></div></body></html>