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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Hi Sayan,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I believe what you are seeing is terracing or ring collapse. This happens when the feg tip shape goes from a sharp 9high intensity) tip to a more blunt (dim)
tip. Sometimes you will even see it split and look like 2 sources. This happens at our facility about once a month so we monitor the intensity very carefully. The good news is that it generally recovers quickly and then remains stable for a long while.
FEI service engineers know about this phenomenon and have some things to do to make it less frequent. One is to decrease the tip temperature and the other is to increase the extraction voltage. You can also reshape the tip by bringing down the Ht and extraction
and then bringing it back up but this does not always work well. If your tip is damaged then it just may need to be changed. Speak to your engineer so he can correct this. I hope that helps. Good luck.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Bob<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> 3dem [mailto:3dem-bounces@ncmir.ucsd.edu]
<b>On Behalf Of </b>Sayan Bhakta<br>
<b>Sent:</b> Saturday, September 03, 2016 6:39 AM<br>
<b>To:</b> 3dem@ncmir.ucsd.edu<br>
<b>Subject:</b> [3dem] Regarding Image Quality from FEI Tecnai G2 Polara<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi,<o:p></o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt">We are facing many problems with our Cryo EM facility. I am giving some details of the machine and one of the main problems we are facing. It would be very helpful if people comment on this and help us to find
the actual problem.<o:p></o:p></p>
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<p class="MsoNormal">Machine:<o:p></o:p></p>
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<p class="MsoNormal">FEI Tecnai G2 Polara<o:p></o:p></p>
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<p class="MsoNormal">300Kv<o:p></o:p></p>
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<p class="MsoNormal">Have been running for last two years.<br>
<br>
Camera:<o:p></o:p></p>
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<p class="MsoNormal">FEI Eagle 4k*4K<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Problem:<o:p></o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt">On the first day when we are putting our sample into the Cryo EM, we are getting good images. From the second day the quality of the images deteriorates.<o:p></o:p></p>
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<p class="MsoNormal">1. If we look at the images taken on the first day and second day, the intensity values of the images decreased on the second day.<o:p></o:p></p>
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<p class="MsoNormal">2. From the FFT, we see nice thorn rings from the images taken on the first day. But for the images taken in the second day, the FFT is very bad. Most of them are having drifts.<o:p></o:p></p>
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<p class="MsoNormal">3. Irrespective of the days, there are some images for which the 1D spectrum is having a cut in between. What I mean by that is there is spectrum upto certain distance in the 1D spectrum, then there is no waves, then again there are some
waves.<o:p></o:p></p>
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<p class="MsoNormal">4. Irrespective of the days, images are sometimes with blakish shadow on one side and with whitish shadow on other side. We need to do gain correction more frequently than usual- a number of times in a day.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt">For your information:<o:p></o:p></p>
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<p class="MsoNormal">1. The vacuum is stable on the second day.<o:p></o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt">2. We are giving Cryo-cycle each weekend.<br>
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<o:p></o:p></p>
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<p class="MsoNormal">If anyone has ever faced the same problem or has any advice on this regard, it would be very helpful. We have been struggling very hard to standardise many issues with our microscope.
<o:p></o:p></p>
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<p class="MsoNormal">-- <o:p></o:p></p>
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<p style="margin:0in;margin-bottom:.0001pt"><span style="font-size:9.5pt;font-family:"Arial","sans-serif";color:black">Sayan Bhakta</span><span style="font-size:9.5pt"><o:p></o:p></span></p>
<p style="margin:0in;margin-bottom:.0001pt;background-image:initial;background-repeat:initial">
<span style="font-size:9.5pt;font-family:"Arial","sans-serif";color:black">Research Scholar</span><span style="font-size:9.5pt"><o:p></o:p></span></p>
<p style="margin:0in;margin-bottom:.0001pt;background-image:initial;background-repeat:initial">
<span style="font-size:9.5pt;font-family:"Arial","sans-serif";color:black">Group of Dr. Jayati Sengupta</span><span style="font-size:9.5pt"><o:p></o:p></span></p>
<p style="margin:0in;margin-bottom:.0001pt;background-image:initial;background-repeat:initial">
<span style="font-size:9.5pt;font-family:"Arial","sans-serif";color:black">CSIR - Indian Institute of Chemical Biology</span><span style="font-size:9.5pt"><o:p></o:p></span></p>
<p style="margin:0in;margin-bottom:.0001pt;background-image:initial;background-repeat:initial">
<span style="font-size:9.5pt;font-family:"Arial","sans-serif";color:black">Kolkata, West Bengal</span><span style="font-size:9.5pt"><o:p></o:p></span></p>
<p style="margin:0in;margin-bottom:.0001pt;background-image:initial;background-repeat:initial">
<span style="font-size:9.5pt;font-family:"Arial","sans-serif";color:black">India</span><span style="font-size:9.5pt"><o:p></o:p></span></p>
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