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Dear colleagues,
<div class="">I want to thank you all for sending valuable advices. It is amazing how effective is our network!<br class="">
Sergej<br class="">
<div apple-content-edited="true" class="">=============================<br class="">
Dr. Sergej Masich<br class="">
Dept. of Cell and Molecular Biology<br class="">
Karolinska Institutet<br class="">
Box 285<br class="">
171 77 Stockholm, Sweden<br class="">
tel: (+)46 - 8 - 524 873 61<br class="">
mobile: (+)46 - 736 - 833 693<br class="">
e-mail: <a href="mailto:Sergej.Masich@ki.se" class="">Sergej.Masich@ki.se</a><br class="">
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<div class="">On 29. 07. 2015, at 15:05, Sergej Masich <<a href="mailto:Sergej.Masich@ki.se" class="">Sergej.Masich@ki.se</a>> wrote:</div>
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<div class="">Dear colleagues, <br class="">
<br class="">
I am looking for a program(s) that would allow me to align manually two density maps. We have reconstructed several particles that may have a common origin and we are trying to trace common features in these particles. We have software that presumably may help
us but it requires pre-aligned densities.<br class="">
<br class="">
I checked Chimera that allows storing rotational and translational parameters for individual maps in Python scripts for saved session. However, I cannot find any definition of these parameters. Moreover, I have not found any routine in Chimera to apply these
parameters to reorient tomographic maps.<br class="">
<br class="">
Can you advise a program/set of programs that would allow me to (1) align two tomographic maps under visual control; (2) store corresponding rotational and translational parameters; and (3) use these parameters to obtain aligned densities?<br class="">
<br class="">
Any advice is appreciated. Thank you in advance.<br class="">
<br class="">
Sergej Masich<br class="">
<br class="">
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