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<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman"">Dear
All,<o:p></o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
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687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman""><o:p> </o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman"">we
would
like to point out the release of a new software package for
electron
tomography, called "Ettention". The software was developed over
the
last couple of years at the German Research Center for
Artificial Intelligence
(DFKI) in Saarbrücken, Germany, in cooperation with the company
EYEN SE, Prague, and Maastricht University.<o:p></o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman""><o:p> </o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman"">Ettention
is
released as open source on the platforms Windows and Linux. It
requires a
OpenCL compatible high performance computing (HPC) backend, such
as <br>
- NVidia GPU, or<br>
- x86 CPU with OpenCL driver installed, or<br>
- Intel Xeon Phi<br>
<br>
Use Cases so far:<br>
<br>
Ettention provides support for typical iterative reconstruction
methods such as
block iterative reconstructions and SIRT and comes integrated in
the eTomo User
Interface of IMOD. It has been used in the NOTOX (FP7-267038)
project for
cryo-EM reconstructions of single tilt CTEM data. <o:p></o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman""><o:p> </o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman"">Ettention
provides
a STEM plugin for the reconstruction of combined tilt- and focal
series data in aberration corrected STEM with limited depth of
field. <o:p></o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman""><o:p> </o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman"">A
laminography plugin has been used in the course of the IMCL
project (AOBJ:
600875) for X-Ray Laminographic reconstructions using geometric
prior
knowledge.<o:p></o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman""><o:p> </o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman"">The
main
point of Ettention is that, due to a modular design and object
oriented
architecture, the system is very extensible and therefore well
suited for
algorithmic experiments. The software automatically takes care
of memory mangement on the HPC device and therefore is suitable
for high resolution reconstructions (2K and more). Ettention is
shipped with numerous tutorials and
examples inclusing implementations of the weighted back
projection, weighted
SIRT and a tutorial demonstrating the use of geometric prior
knowledge.<o:p></o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman""><o:p> </o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman"">Ettention
can
be downloaded from <a href="http://www.ettention.org">www.ettention.org</a>
or <a href="https://github.com/c3di/ettention.git">https://github.com/c3di/ettention.git</a>.
Please feel free to use the software and provide us feedback via
<a href="mailto:contact@ettention.org">contact@ettention.org</a>.<o:p></o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman""><o:p> </o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman"">A
first hands-on experience on Ettention will be given during the
cryo-EM workshop
in Maastricht, July 8-10.<o:p></o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt
687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman""><o:p><br>
We thank David Matronarde and Sue Held for their help
integrating ettention in the eTomo GUI. <br>
<br>
</o:p></span></p>
<p class="MsoNormal"
style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
normal;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt
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687.0pt 732.8pt"><span
style="font-size:10.0pt;font-family:"Courier
New";mso-fareast-font-family:"Times New Roman"">best
regards<o:p></o:p></span></p>
<span
style="font-size:10.0pt;line-height:115%;font-family:"Courier
New";
mso-fareast-font-family:"Times New
Roman";mso-ansi-language:EN-US;mso-fareast-language:
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</span>The
Ettention Team</span>
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<pre class="moz-signature" cols="72">--
Tim Dahmen
Senior Consultant
Deutsches Forschungszentrum für Künstliche Intelligenz GmbH, DFKI
Agenten und Simulierte Realität
Campus D3 2
Raum -1.21 HG
Stuhlsatzenhausweg 3
D-66123 Saarbrücken
Tel.: +49 6 81 / 8 57 75 - 10 45
Fax.: +49 6 81 / 8 57 75 - 22 35
Internet: <a class="moz-txt-link-abbreviated" href="http://www.dfki.de">www.dfki.de</a></pre>
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