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Dear Christian,<br>
<br>
In xmipp you can use <b>xmipp_image_header</b> to set header
information, from a metadata file, in all supported image file
formats.<br>
<br>
Best regards,<br>
Joaquín<br>
<br>
<div class="moz-cite-prefix">On 11/14/2014 06:22 PM, Christian Geiss
wrote:<br>
</div>
<blockquote cite="mid:54663A55.103@biophysik.org" type="cite">
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<div class="moz-cite-prefix">Dear 3dem group,<br>
<br>
I found a solution as a colleague was directing me to...after
this, it is kind of trivial, at least for experienced IMOD
users, for those like me, who don't use it regularily, here
comes the easy solution:<br>
<br>
In the initial setup of etomo, you can manually set the angular
range and increment by specifiying the starting angle option.
Somehow, I have overseen this.<br>
<br>
@ Steve<br>
<br>
Ok, it must be that I then run a older version.<br>
<br>
@ Reinhard<br>
<br>
Thanks for this information. Next time, I will adress more
IMOD-specific questions to this email list.<br>
<br>
Thanks for your contribution,<br>
Christian<br>
<br>
<br>
On 11/14/2014 03:34 PM, Steven Ludtke wrote:<br>
</div>
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cite="mid:E307B765-984D-4237-AD51-8B7217CABF63@bcm.edu"
type="cite">
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Hi Christian, the current version of EMAN2.1 should be able to
read DM4 images/stacks and headers. What version were you trying
? If you are having a problem with this please let us know as
it should be working properly.
<div class=""><br class="">
<div apple-content-edited="true" class="">
<div class=""><span style="font-family: monospace; "
class="">----------------------------------------------------------------------------</span><br
style="font-family: monospace; " class="">
<span style="font-family: monospace; " class="">Steven
Ludtke, Ph.D.</span><br style="font-family: monospace; "
class="">
<span style="font-family: monospace; " class="">Professor,
Dept. of Biochemistry and Mol. Biol.
Those who do</span><br style="font-family: monospace; "
class="">
<span style="font-family: monospace; " class="">Co-Director
National Center For Macromolecular Imaging</span><span
class="Apple-tab-span" style="font-family: monospace;
white-space: pre; "> </span><span style="font-family:
monospace; " class=""> ARE</span><br
style="font-family: monospace; " class="">
<span style="font-family: monospace; " class="">Baylor
College of Medicine
The converse</span><br style="font-family: monospace; "
class="">
<span style="font-family: monospace; " class=""><a
moz-do-not-send="true" href="mailto:sludtke@bcm.edu"
class="">sludtke@bcm.edu</a> -or- <a
moz-do-not-send="true"
href="mailto:stevel@alumni.caltech.edu" class="">stevel@alumni.caltech.edu</a>
also applies</span><br style="font-family:
monospace; " class="">
<span style="font-family: monospace; " class=""><a
moz-do-not-send="true"
href="http://ncmi.bcm.edu/%7Estevel" class="">http://ncmi.bcm.edu/~stevel</a></span><br
style="font-family: monospace; " class="">
</div>
<div class=""><span style="font-family: monospace; "
class=""><br class="">
</span></div>
<br class="Apple-interchange-newline">
</div>
<br class="">
<div>
<blockquote type="cite" class="">
<div class="">On Nov 14, 2014, at 3:49 AM, Christian Geiss
<<a moz-do-not-send="true"
href="mailto:geiss@biophysik.org" class="">geiss@biophysik.org</a>>
wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
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charset=windows-1252" class="">
<div bgcolor="#FFFFFF" text="#000000" class=""> Dear
3dem-Group,<br class="">
<br class="">
I am looking for a decent way to manipulate the header
information in MRC files, particularly the metadata
where e.g. tilt angles are saved, since<br class="">
IMOD cannot generate the com scripts in the initial
setup when running the extracttilts subroutine. Has
anyone experience with this?<br class="">
<br class="">
The background is that I loose my tilt angle
information when converting dm4 files to mrc by the
dm2mrc routine of the imod package. It would be also
quite useful if someone knows a conversion script that
preserves this information (EM2EM, EMAN2 for instance
are all not versatile to this as they do not support
dm4 or they cannot handle dm4 dose fractionation
stacks).<br class="">
<br class="">
Thanks in advance,<br class="">
Christian Geiss<br class="">
<div class="moz-signature">-- <br class="">
<b class="">Christian Geiss, M.sc.</b><br class="">
Universitaet Frankfurt BMLS<br class="">
Frangakis Group<br class="">
Max-von-Laue-Strasse 15<br class="">
D - 60438 Frankfurt am Main<br class="">
Phone: +49-(0)69-79842597<br class="">
Fax: +49-(0)69-79846467<br class="">
<font class="" color="#0000EE"><a
moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:geiss@biophysik.org">geiss@biophysik.org</a></font><br
class="">
</div>
</div>
_______________________________________________<br
class="">
3dem mailing list<br class="">
<a moz-do-not-send="true"
href="mailto:3dem@ncmir.ucsd.edu" class="">3dem@ncmir.ucsd.edu</a><br
class="">
<a moz-do-not-send="true" class="moz-txt-link-freetext"
href="https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem">https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem</a><br
class="">
</div>
</blockquote>
</div>
<br class="">
</div>
</blockquote>
<br>
<br>
<div class="moz-signature">-- <br>
<b>Christian Geiss, M.sc.</b><br>
Universitaet Frankfurt BMLS<br>
Frangakis Group<br>
Max-von-Laue-Strasse 15<br>
D - 60438 Frankfurt am Main<br>
Phone: +49-(0)69-79842597<br>
Fax: +49-(0)69-79846467<br>
<font color="#0000EE"><a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:geiss@biophysik.org">geiss@biophysik.org</a></font><br>
</div>
<br>
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<pre wrap="">_______________________________________________
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</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
____________________________________________________
Joaquín Otón Pérez
Biocomputing Unit
National Center of Biotechnology (CSIC)
C/Darwin,3
Campus Universidad Autónoma de Madrid (Cantoblanco)
28049 Madrid (Spain)
Tlf: (34) 91 585 45 10
Fax: (34) 91 585 45 06
email: <a class="moz-txt-link-abbreviated" href="mailto:joton@cnb.csic.es">joton@cnb.csic.es</a>
web: <a class="moz-txt-link-freetext" href="http://biocomp.cnb.csic.es">http://biocomp.cnb.csic.es</a>
Public PGP key:
<a class="moz-txt-link-freetext" href="http://keys.gnupg.net/pks/lookup?op=get&search=0x6557C65B96016CCC">http://keys.gnupg.net/pks/lookup?op=get&search=0x6557C65B96016CCC</a>
____________________________________________________
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