[3dem] CZII particle picking competition datasets now available on the cryoET Data Portal

[Utz Ermel]

Dear 3D-EM community,

I’m pleased to announce that the results of CZII’s cryoET particle picking
competition are now available on the cryoET data portal. We have updated our
competition page <https://urldefense.com/v3/__https://cryoetdataportal.czscience.com/competition__;!!Mih3wA!FoB6fKfkvIBvOnI_hJo2WiW5FOXHuPQe3cCxQw-dXEWYCOSdYBSfqz9Ya-MJ80j6eiiX7V8cXAALTOShKRpW$ > to
summarize the competition and preserve the original information.

As part of this update, we are also releasing the training set and
public/private test sets in full (492 tomograms in total). You can now
access them, including the ground truth locations and raw data, on the
pages linked below:


   -

   CZII - CryoET Object Identification Challenge - Experimental Training
   Data <https://urldefense.com/v3/__https://cryoetdataportal.czscience.com/datasets/10440__;!!Mih3wA!FoB6fKfkvIBvOnI_hJo2WiW5FOXHuPQe3cCxQw-dXEWYCOSdYBSfqz9Ya-MJ80j6eiiX7V8cXAALTFCBznDR$ >
   -

   CZII - CryoET Object Identification Challenge - Public Test Dataset
   <https://urldefense.com/v3/__https://cryoetdataportal.czscience.com/datasets/10445__;!!Mih3wA!FoB6fKfkvIBvOnI_hJo2WiW5FOXHuPQe3cCxQw-dXEWYCOSdYBSfqz9Ya-MJ80j6eiiX7V8cXAALTCOEh7Zr$ >
   -

   CZII - CryoET Object Identification Challenge - Private Test Dataset
   <https://urldefense.com/v3/__https://cryoetdataportal.czscience.com/datasets/10446__;!!Mih3wA!FoB6fKfkvIBvOnI_hJo2WiW5FOXHuPQe3cCxQw-dXEWYCOSdYBSfqz9Ya-MJ80j6eiiX7V8cXAALTJz1xJ_O$ >


If you want to demonstrate the performance of your own model or believe you
can improve on the competition results, we welcome submissions to the data
portal using our data submission form
<https://urldefense.com/v3/__https://airtable.com/apppmytRJXoXYTO9w/shr5UxgeQcUTSGyiY?prefill_Event=Portal&hide_Event=true__;!!Mih3wA!FoB6fKfkvIBvOnI_hJo2WiW5FOXHuPQe3cCxQw-dXEWYCOSdYBSfqz9Ya-MJ80j6eiiX7V8cXAALTGxLMHe6$ >.
Note that the tomograms hosted on the cryoET Data Portal have been updated
after the challenge closed to correct their physical hand.

For your convenience, we have imported the predictions of the 10 winning
teams, and made them available here
<https://urldefense.com/v3/__https://cryoetdataportal.czscience.com/browse-data/depositions?competition=true__;!!Mih3wA!FoB6fKfkvIBvOnI_hJo2WiW5FOXHuPQe3cCxQw-dXEWYCOSdYBSfqz9Ya-MJ80j6eiiX7V8cXAALTONvRjuW$ >
for
the public and private test sets. You can view the results directly in your
browser using our tomogram viewer, and download tomograms and points to
test your own detection methods.


We’re looking forward to seeing your predictions!

Best regards,

Utz Ermel
-- 

Utz H. Ermel

he/him/his

Scientist


<https://urldefense.com/v3/__https://www.czimaginginstitute.org/__;!!Mih3wA!FoB6fKfkvIBvOnI_hJo2WiW5FOXHuPQe3cCxQw-dXEWYCOSdYBSfqz9Ya-MJ80j6eiiX7V8cXAALTO5v6BEx$ >

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