[3dem] PDB-Dev now PDB-IHM

[Justin Flatt]

_Integrative structures are available at wwPDB.org and the PDB archive_

Structures of many large macromolecular assemblies are now being 
determined using integrative approaches, wherein information derived 
from multiple experimental and computational methods is combined to 
compute their three-dimensional structures. PDB-IHM (formerly PDB-Dev) 
is a system for archiving and disseminating structures determined using 
integrative or hybrid methods (IHM), and making them Findable, 
Accessible, Interoperable, and Reusable (FAIR).

In August 2024, PDB-Dev was unified with the PDB to deliver integrative 
structures alongside experimental structures in the PDB archive [1]. 
With unification, integrative structures are assigned PDB accession 
codes and Digital Object Identifiers (DOIs), annotated as IHM 
structures, and can be accessed from the PDB archive, PDB DOI links 
(e.g., DOI: 10.2210/pdb8zzc/pdb [2]), and the PDB-IHM website [3]. Now 
part of the PDB infrastructure, PDB-Dev has been rebranded as PDB-IHM, 
denoting IHM structures archived in the PDB.

Integrative structures can be deposited through the PDB-IHM deposition 
portal [4] and accessible from the wwPDB OneDep home page [5]. They are 
processed in parallel to the wwPDB OneDep system [5]. Structures 
processed by PDB-IHM are released synchronously with PDB structures 
weekly on Wednesdays at 00:00 UTC.

In the future, the wwPDB partners, including Research Collaboratory for 
Structural Bioinformatics Protein Data Bank (RCSB PDB [6]) in the United 
States, Protein Data Bank in Europe (PDBe [7]), and Protein Data Bank 
Japan (PDBj [8]), will disseminate integrative structures on their 
respective websites.

We look forward to supporting the structural biology community with 
depositing integrative structures to PDB-IHM [3].

Questions or feedback? Contact deposit-help at mail.wwpdb.org or 
heldesk at pdb-ihm.org.

Links:
------
[1] https://urldefense.com/v3/__https://files.wwpdb.org/pub/__;!!Mih3wA!HgNR3UXhmq2Y0JnKHP4eTSBcpAW1awu1kXQutmPAo_nw0Ltf5MX0gALp-Mp6wpQbUamSUTgE3R4sPnJSVZc-MLrm$ 
[2] https://urldefense.com/v3/__https://doi.org/10.2210/pdb8zzc/pdb__;!!Mih3wA!HgNR3UXhmq2Y0JnKHP4eTSBcpAW1awu1kXQutmPAo_nw0Ltf5MX0gALp-Mp6wpQbUamSUTgE3R4sPnJSVWe6UaRh$ 
[3] https://urldefense.com/v3/__https://pdb-ihm.org/__;!!Mih3wA!HgNR3UXhmq2Y0JnKHP4eTSBcpAW1awu1kXQutmPAo_nw0Ltf5MX0gALp-Mp6wpQbUamSUTgE3R4sPnJSVbbTUB6d$ 
[4] https://urldefense.com/v3/__https://data.pdb-ihm.org/__;!!Mih3wA!HgNR3UXhmq2Y0JnKHP4eTSBcpAW1awu1kXQutmPAo_nw0Ltf5MX0gALp-Mp6wpQbUamSUTgE3R4sPnJSVfk_zVfk$ 
[5] https://urldefense.com/v3/__https://deposit.wwpdb.org/__;!!Mih3wA!HgNR3UXhmq2Y0JnKHP4eTSBcpAW1awu1kXQutmPAo_nw0Ltf5MX0gALp-Mp6wpQbUamSUTgE3R4sPnJSVSjxiJdA$ 
[6] https://urldefense.com/v3/__https://rcsb.org/__;!!Mih3wA!HgNR3UXhmq2Y0JnKHP4eTSBcpAW1awu1kXQutmPAo_nw0Ltf5MX0gALp-Mp6wpQbUamSUTgE3R4sPnJSVWGCCzUV$ 
[7] https://urldefense.com/v3/__https://ebi.ac.uk/pdbe/__;!!Mih3wA!HgNR3UXhmq2Y0JnKHP4eTSBcpAW1awu1kXQutmPAo_nw0Ltf5MX0gALp-Mp6wpQbUamSUTgE3R4sPnJSVTdLwomE$ 
[8] https://urldefense.com/v3/__https://pdbj.org/__;!!Mih3wA!HgNR3UXhmq2Y0JnKHP4eTSBcpAW1awu1kXQutmPAo_nw0Ltf5MX0gALp-Mp6wpQbUamSUTgE3R4sPnJSVZ-1ADBG$ 
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