[3dem] determine spherically averaged radial density

[Tom Calcraft]

Hi Dieter,

The math.rotationalaverage function in EMAN2’s e2proc3d.py should do what you are looking for:

e2proc3d.py --process=math.rotationalaverage input.mrc output.mrc

Best,
Tom

> On 9 Apr 2024, at 10:33, Dieter Blaas <dieter.blaas at meduniwien.ac.at> wrote:
>
>
> External Sender: Use caution.
>
>
> Dear all,
>
>   we need to determine the spherically averaged radial density of a
> symmetric virus. Long ago, we used for this xmipp_operate but my old
> scipion3 and xmipp installs do not work any more. Is there any other
> piece of software that can easily do this without too much ado?
>
> Thanks for hints, Dieter
>
> ------------------------------------------------------------------------
> Dieter Blaas,
> Max Perutz Laboratories
> Medical University of Vienna,
> Inst. Med. Biochem., Vienna Biocenter (VBC),
> Dr. Bohr Gasse 9/3,
> A-1030 Vienna, Austria,
> Tel: 0043 1 4277 61630,
> Mobile: 0043 699 1942 1659
> e-mail: dieter.blaas at meduniwien.ac.at
> ------------------------------------------------------------------------
>
> _______________________________________________
> 3dem mailing list
> 3dem at ncmir.ucsd.edu
> https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem

The Francis Crick Institute Limited is a registered charity in England and Wales no. 1140062 and a company registered in England and Wales no. 06885462, with its registered office at 1 Midland Road London NW1 1AT