[3dem] Problem with Relion multi-body refinement

[De Biasio, Alfredo (Dr.)]

Hi Takanori,

Thanks, with the 3.0.2 version all worked fine.

Kind regards,

Alfredo
On 14/03/2019, 14:04, "Takanori Nakane" <tnakane at mrc-lmb.cam.ac.uk> wrote:

    Hi,
    
    We recently fixed a bug in multi-body refinement.
    Could you please try the latest version (3.0.2) on our GitHub?
    
    Best regards,
    
    Takanori Nakane
    
    > Dear all,
    >
    > I am running Multi-Body Refinement on a two-body complex and I get the
    > following error message after the 8th iteration:
    >
    >  3: Message truncated
    >   3: Message truncated, error stack:
    > PMPI_Wait(219).....: MPI_Wait(request=0x7ffea6199c88,
    > status=0x7ffea6199d10) failed
    > MPIR_Wait_impl(100): fail failed
    > do_cts(649)........: Message truncated; 409319840 bytes received but
    > buffer size is 409172384
    > srun: error: compute5: task 3: Segmentation fault (core dumped)
    >
    > If I continue the job from the 8th iteration, it gets to completion but
    > the final maps of the 2 bodies have completely different masks from the
    > initial (correct) masks and are highly anisotropic.
    >
    > Could you, please, help?
    >
    > Thank you,
    >
    > Alfredo De Biasio
    > LISCB, Leicester
    >
    >
    >
    > _______________________________________________
    > 3dem mailing list
    > 3dem at ncmir.ucsd.edu
    > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.ncmir.ucsd.edu%2Fmailman%2Flistinfo%2F3dem&data=02%7C01%7Cadb43%40leicester.ac.uk%7Cc92502ed7f7641233beb08d6a885fe60%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C636881690785694232&sdata=96lmNweVZjFwTQNcg%2FZKfw6jYJDXXkl4TKaF%2FF5JLLA%3D&reserved=0
    >