[3dem] Total variation in ET reconstruction(?)

[Johannes Haataja]

Dear all,
	thank you for the helpful links & resources. In addition to SNARK14,
two other software packages, that also include TV, were pointed out

"Compressed Sensing Electron Tomography for Determining Biological
Structure", Guay et al.
http://dx.doi.org/10.1038/srep27614
https://github.com/norbert-wiener-center/cset

"ICON: 3D reconstruction with ‘missing-information’ restoration in
biological electron tomography." 
Deng et al.
http://dx.doi.org/10.1016/j.jsb.2016.04.004.
http://feilab.ibp.ac.cn/LBEMSB/ICON.html

My best,
 	- J.

on to, 2016-09-01 at 11:31 +0000, Gabor Herman wrote:
> The software package SNARK14 is freely available from
> http://www.dig.cs.gc.cuny.edu/software/snark14/
> and has total variation (TV)  incorporated in it.
> 
> Gabor T. Herman, Ph.D.
> Distinguished Professor of Computer Science
> The Graduate Center of the City University of New York
> www.dig.cs.gc.cuny.edu/~gabor/index.html 
> .
> ========================================== 
> .
> ANNOUNCEMENTS 
> 
> .
> Inverse Problems has an upcoming special issue entitled Special issue on superiorization: theory and applications.
> The closing date for submissions is 30 April 2016.
> \http://iopscience.iop.org/journal/0266-5611/page/Special-issue-superiorization-theory-and-applications
> 
> .
> SNARK14 (a programming system for the reconstruction of 2D images from 1D projections)
> http://www.dig.cs.gc.cuny.edu/software/snark14/
> 
> . 
> How I became an object of slander by Pamela Geller, Ron Torossian and their Ilk
> http://www.dig.cs.gc.cuny.edu/~gabor/How_with_revised_links.pdf
> 
> --------------------------------------------
> On Thu, 9/1/16, Johannes Haataja <johannes.haataja at aalto.fi> wrote:
> 
>  Subject: [3dem] Total variation in ET reconstruction(?)
>  To: "3dem at ncmir.ucsd.edu" <3dem at ncmir.ucsd.edu>
>  Date: Thursday, September 1, 2016, 6:04 AM
>  
>  Dear all,
>      does anyone know if any of the freely
>  available ET software packages
>  include total variation (TV)/compressive sensing
>  reconstruction scheme?
>  I would prefer to use existing one instead of implementing
>  one myself...
>  
>  My best,
>      J. Haataja
>  
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