[3dem] .raw file format conversion

[Javier Vargas]

Dear Tofayel,

Indeed, and as Win indicates, the current FEI EPU version writes the frames
in a 16 bit MRC stack, and all our work with stacks has been with the
newest FEI EPU software, so we do not have anything special for older
formats.

(of course, for previous versions, you can certainly use the generic read
capability in XMIPP accessing directly the binary and the header, but you
need the datatype, size and offset )

http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/ImageFormats

I take the opportunity to indicate that in the current XMIPP development
version we already have a workflow for the Optical Flow correction of both
global and local BIM patterns, as we recently presented in Lake Tahoe and
Barcelona. It will appear in the general software release as soon as the
paper gets accepted (if you wish to use the new software before, please
contact me separately)

With best wishes.. Javier and Jose Maria

AHMED TOFAYEL wrote:
> Dear all,
>
> I am new to the 3DEM mailing and this is my first mail to the EM
> community. I will be grateful if some of you could help me. I have a
> basic question about raw file formats. I have my data in raw format
> from Falcon2 detector in movie frames but I am unable to convert it to
> other formats. I tried XMIPP but it says that files are corrupted. I
> have also tried imageJ and em2em but still unable to convert it. I
> also tried spider but the converted files look different.
>
> I hope that some of you also might have encountered the same problem
> and would have found the ways to deal with it.
>
>
> Thanks and hoping to get some help.
>
>
> Best regards,
>
> Tofayel Ahmed
>
> Graduate Student
>
> NTU Singapore
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