[3dem] Re: 3dem Digest, Vol 47, Issue 3

[Julio Lenin Dominguez Ramirez]

Sali's Modeller is also capable of the fitting you want to do. http://salilab.org/modeller/tutorial/cryoem



Dear all,

I have a pdb file which was producted by protein prediction and a mrc
file which was producted by EMAN。
I want to fit the predicted structure(pdb file) into the volumn(mrc
file) through Situs v2.6(download from http://situs.biomachina.org).
How should I do that?
Any advices would be appreciated.

-- 
Regards!
C.J.

"And for all the current and rather silly emphasis on structural biology,understanding enzymes means understanding catalysis and catalysis is concerned with kinetics, not structure: as Jeremy Knowles aptly remarked, studying the photograph of a racehorse cannot tell you how fast it can run." 
Cornish-Bowden, 1995

On Jul 8, 2011, at 12:00, 3dem-request at ncmir.ucsd.edu wrote:

> Dear all,
> 
> I have a pdb file which was producted by protein prediction and a mrc
> file which was producted by EMAN。
> I want to fit the predicted structure(pdb file) into the volumn(mrc
> file) through Situs v2.6(download from http://situs.biomachina.org).
> How should I do that?
> Any advices would be appreciated.
> 
> -- 
> Regards!
> C.J.
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